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Getting Started

  • Installation
  • Why UltraPlot?
  • Using UltraPlot
  • UltraPlot Gallery
    • Shared axes and ABC labels
    • Complex layout with insets
    • Spanning labels with shared axes
    • Multi-panel colorbars
    • Legend with inset colorbar
    • Semantic legends
    • Robinson projection tracks
    • Orthographic comparison
    • Map projections and features
    • Simple choropleth
    • Curved quiver around a cylinder
    • Network graph styling
    • Lollipop comparisons
    • Calendar-aware datetime series
    • Box and violin plots
    • Ridge Plot
    • Radar chart
    • Layered Sankey diagram
    • Chord diagram
    • Ternary Plots
    • Phylogeny
    • Circos from BED
    • Top-aligned ribbon flow
    • Taylor Diagram
    • Colormap-driven cycles
    • Diverging colormap

User Guide

  • The basics
  • Subplots
  • Cartesian axes
  • Networks
  • Geographic and polar axes
  • Colorbars and legends
  • Insets and panels
  • 1D plotting commands
  • 2D plotting commands
  • Statistical plotting
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  • Color cycles
  • Color names
  • Font selection
  • Configuring UltraPlot

Reference

  • API reference
  • Lazy Loading and Adding New Modules
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  • What’s new?
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  • About UltraPlot
  1. UltraPlot /
  2. UltraPlot Gallery /
  3. Phylogeny
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Note

Go to the end to download the full example code.

Phylogeny#

UltraPlot wrapper around pyCirclize phylogeny plots.

, Phylogeny
import ultraplot as uplt

newick = "((A,B),C);"

fig, ax = uplt.subplots(proj="polar", refwidth=3.2)
ax.phylogeny(newick, leaf_label_size=10)
ax.format(title="Phylogeny")
fig.show()

Download Jupyter notebook: 09_phylogeny.ipynb

Download Python source code: 09_phylogeny.py

Download zipped: 09_phylogeny.zip

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